GraphStore.get_graph_overview (top-N by degree, bounded) + get_node_detail (description + linked chunks). GET /api/sources/<id>/graph + /graph/node/<id> (read-access gated, node scoped to source_id; empty graph -> {nodes:[],edges:[]}). Frontend GraphView (react-force-graph-2d) wired to config.kind=graphrag via card-click/'View graph'; node-click -> description + chunks; tooltip renders untrusted names as text (no innerHTML XSS). All read-only GraphStore methods rollback their txn (no idle-in-transaction lock). Unit G7. (Also a pre-existing prettier fix in WorkflowPreview to keep lint green.)
graph_enabled() sets kind=graphrag + retriever=graphrag. extract_graph_worker fetches the source's pgvector chunks and runs G3 extraction (graphrag_available guard, empty no-op). extract_graph durable+idempotent task; key varies with source updated_at so re-ingest/re-enable re-run incrementally (G3 checkpoint skips done chunks) while concurrent same-state enqueues dedup. The 4 ingest paths enqueue after embed when kind=graphrag (isolated in try/except so a broker hiccup can't fail the ingest). POST /api/sources/<id>/graphrag/enable: pgvector+GRAPHRAG_ENABLED gated, owner/editor write-authz; PATCH config still can't flip kind->graphrag. Unit G4.
Per-chunk schema-constrained LLM extraction (gleanings off, one .gen() per chunk) into the GraphStore: model resolves config.graph.extraction_model -> GRAPHRAG_EXTRACTION_MODEL -> instance LLM_NAME; token_usage logged per call (_token_usage_source=graph_extraction, owner-attributed via decoded_token); chunk text fenced as untrusted; robust JSON parse (malformed/errors skip the chunk, never crash); resumable via graph_ingest_progress; max_chunks cap; entity names embedded + merged by normalized_name; chunk_id = doc_id so links match retrieval. Unit G3.
On-demand graph_nodes/graph_edges/graph_node_chunks/graph_ingest_progress in the same DB as pgvector documents (no Alembic, no cross-DB FK; Python uuids; parameterized SQL). upsert_node (merge by normalized_name, doc_freq, dedup description), add_edge (+degree), link_node_chunk, search_nodes_by_embedding (cosine), bounded get_subgraph, checkpoint, delete_by_source. Embedding dim derived from the configured model (768 fallback). Unit G2.
sources.tokens was only set at ingest, so wikis showed no/stale token count on the card (blank wikis showed nothing; converted ones showed the stale original count). rebuild_wiki_directory_structure (called after every wiki mutation) now also sets sources.tokens to the sum of wiki_pages.token_count; blank wiki create sets tokens=0. So the card reflects live wiki content.
convert_source_to_wiki now builds pages from the source's already-ingested vector-store chunks instead of re-parsing storage files, so it works for crawler/remote/connector sources (which have no stored files; file_path empty). Groups by metadata file_path/file_name (URL- and connector-aware; URLs normalized to virtual paths) rather than the raw source. Passes embeddings_key to create_vectorstore in BOTH convert and reembed_wiki_page (fixes a TypeError crash on faiss/elasticsearch). Conservative overlap-trim (min length). Deletes the original chunks after reassembling so retrieval has no duplicate/stale content.
Unit 6 of F-Wiki (D22 + D24). Migration 0024 adds wiki_pages.updated_via; set to 'agent' by WikiTool + convert, 'human' by the edit/seed endpoints (content-hash short-circuit preserves it). WikiViewer gains a markdown editor (Save via PUT with expected_version; 409 reloads latest while keeping the draft; 403 graceful) and a per-page provenance stamp (editor/when/version). Edit gated on write access client-side; backend remains the real authz.
Unit 5 of F-Wiki (D20-D23). convert_source_to_wiki task reuses reingest's storage file-load + parser to materialize files->wiki_pages (one page/file), skips/reports non-text, re-embeds per page, and flips kind=wiki + exposure=agentic_tool only when pages were created. POST /wiki/convert (explicit, write-authz; blank source enables inline, fileful enqueues the task; rejects mid-ingest). PUT /wiki/page for human edits (write-authz, optimistic version -> 409, re-embed). PATCH /config preserves kind (kind changes only via convert).
Unit 4 of F-Wiki. POST /api/sources/wiki creates a type=wiki/kind=wiki source with no ingest task (optional seed page enqueues reembed). GET /wiki/pages + /wiki/page serve the tree + fresh page content, read-access gated (owner or team grant), path-validated. Frontend: 'Create Wiki' ingestor entry, read-only WikiViewer (FileTree + react-markdown, no raw HTML), sync/reingest hidden for wiki sources.
Unit 3 of F-Wiki. WikiTool (view/create/str_replace/insert/delete/rename) over wiki_pages: exact-case unique str_replace (no silent multi-replace), optimistic version on edits (WikiPageConflict), reads served fresh from Postgres, untrusted-content fencing on reads, 1MB page cap. Injected via add_wiki_tool only for writable wiki sources (effective_write_owner: owner/team-editor; viewers get nothing), scoped to one source_id. Each mutation enqueues reembed_wiki_page (owner as user, per-page idempotency key) and rebuilds directory_structure. Shared validate_tool_path extracted from MemoryTool.
Per-page re-embed (Unit 2 of F-Wiki): targeted delete of the page's old chunks, re-chunk via the source's chunking config, add_chunk with reingest-matching metadata (source=path), set embed_status embedded/failed. Durable + idempotent (key=content_hash), mirroring reingest_source_task. Missing page => purge only.
Migration 0023_wiki_pages (source-scoped; version/content_hash/embed_status; FK source_id->sources ON DELETE CASCADE; UNIQUE(source_id,path) + prefix index). WikiPagesRepository: path-keyed CRUD with content-hash short-circuit, version bump, and move-with-reject. BaseVectorStore.delete_chunks_by_source_path (loop default) + parameterized pgvector override (DELETE WHERE source_id=%s AND metadata->>'source'=%s). Unit 1 of F-Wiki.
Introduces a per-source config contract that makes RAG behavior strategy-dispatched instead of a single hardcoded path. Every source gains a validated JSONB config; an empty/absent config reproduces current behavior byte-for-byte, and the whole path is gated by PER_SOURCE_RETRIEVAL_ENABLED.
Foundation: sources.config JSONB column + migration 0022_source_config; SourceConfig/ChunkingConfig/RetrievalConfig pydantic models (strict on write, lenient on read); ChunkerCreator and RetrieverCreator.register registries; config threaded through the upload routes, ingest/remote/connector workers, and reingest.
Retrieval: a Dispatcher groups sources by retriever key (all-classic collapses to today's single ClassicRAG under one shared token budget; non-classic retrievers get their own instance), removing the previous single-global-retriever collapse in stream_processor. Per-source chunks, score_threshold (honored for pgvector/mongodb, safely ignored elsewhere), and rephrase_query toggle. New PATCH /api/sources/<id>/config with team-aware (effective_write_owner) authz and a requires_reingest signal.
Chunking strategies: recursive, markdown, parent_child (selectable per source; re-ingest to apply). Search exposure: per-source prefetch vs agentic_tool for agentic/research agents. Map-reduce prescreen: optional LLM relevance pre-filter implemented as a composable post-retrieval stage that wraps any retriever.
Backend and frontend (shared Retrieval options panel + edit modal) with tests; backend suite and frontend vitest green. Excludes the wiki and GraphRAG flagships.
main added migration 0018_tool_attempts_attribution (revises 0017_oidc_scim), which collided with the feature's 0018_agent_slug. Renumbered the agent-slug migration to 0019 (revises 0018_tool_attempts_attribution) so the Alembic chain stays linear (single head). Auto-merge was conflict-free — models.py, the frontend API layer, and all 7 locale files merged additively.
Rewrite the default/creative/strict presets (classic + agentic) into
structured sections: grounding and cite-by-title guidance, insufficient-
context behavior, current date, respond-in-user-language, scoped mermaid
usage, an untrusted-content guardrail, and a conditional XML-tagged
document context block. A memory directory listing is injected at render
time via the template prefetch mechanism so the model starts oriented
without burning a tool call.
Fixes along the way:
- Agentic preset swap was dead code: _get_prompt_content cached the
classic preset before create_agent's swap check ran, so agentic and
research agents always got the classic preset. The swap now happens
inside _get_prompt_content.
- Jinja autoescape corrupted document content in custom prompts
(< -> <); prompts are not HTML, autoescape is now off.
- Literal {summaries} leaked into the prompt when no docs were
retrieved; the placeholder is now stripped.
- Agentic/research prompts referenced tool names from a dropped naming
scheme (search_internal, reason_think); they now reference the real
names (search, reason).
- The strict preset told the model to "be very creative and use your
imagination" right after "never make up information".
- extract_tool_usages recorded intermediate attribute chains as
bare-tool usages, which meant "run all actions" at prefetch; only
maximal chains are recorded now.
- Headless runs retrieved docs but never rendered them into the
prompt; the prompt is now rendered like the streaming path.
- Default tools were unreachable by name in prompt templates
(prefetch results were keyed by synthetic id only); defaults now
claim the name key unless an explicit row shadows it.
Tool layer: memory/notes/todo actions are namespaced (memory_view,
note_overwrite, todo_create, ...) with legacy unprefixed names still
accepted via prefix stripping; duplicate action names across tools are
disambiguated with the owning tool's name instead of numeric suffixes;
thin tool descriptions rewritten (brave, duckduckgo, telegram, ntfy,
cryptoprice, read_webpage, internal_search, think).
Docs are now wrapped per chunk in <document index>/<source>/<content>
tags for citation-by-title support.
- Move analytics endpoints to Postgres with agent filtering that matches both stamps (api_key for external traffic, agent_id for owner/headless)
- Add tool & schedule analytics, token grouping (model/agent/source) and side-channel toggle
- Merge chat/system/webhook/workflow/schedule events into one logs timeline with level/type/search filters
- Stamp user/agent on tool_call_attempts at propose time (migration 0018) and backfill via parent message
- Frontend: revamped Analytics charts and Logs page
Alex